Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30313523_30314235_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30313523 - 30314235

Intron Length:

713

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

TCTTTTCATCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTGTGATCT

Flanking Amino Acid:

DQLHESFKDILDDLPYEGKI

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

74.3

34.1

Major BPS

100

1.24

0.5

100

Major PPT

80.4

0.68

0.8

74.3

35.6

Minor 5ss

38.9

-1.3

2.7

34.4

Minor BPS

49.5

0.04

2.3

80.23

41.8

Associated Gene:

Gene:

GXYLT1

Ensembl Gene ID:

ENSAPLG00000004547

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004690

30302187 - 30332549

30363