About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30314411_30324328_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30314411 - 30324328
Intron Length:
9918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ATTTTTGTATCA
Flanking Amino Acid:
GMNCFWEAAFRYDYMKEHPS
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
79
0.65
1
78.5
39.2
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
49
-0
2.2
68.58
38.4

Associated Gene:

Gene:
GXYLT1
Ensembl Gene ID:
ENSAPLG00000004547
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004690
30302187 - 30332549
30363