About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30324422_30332058_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30324422 - 30332058
Intron Length:
7637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGAC
5'SS Class:
major
3'SS Sequence:
CTTATCCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTGTCTTATCC
Flanking Amino Acid:
AAAGRSGGAGRCKNLSVSFW
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.6
38
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
70.4
0.46
1
70.1
36.3
Minor 5ss
28.4
-2.5
3.7
40.2
46.2
Minor BPS
66.1
0.48
1.7
77.51
38.8

Associated Gene:

Gene:
GXYLT1
Ensembl Gene ID:
ENSAPLG00000004547
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004690
30302187 - 30332549
30363