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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30348839_30351855_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30348839 - 30351855
Intron Length:
3017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
TSKKNSHKKTRPRLKNVDRS
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78
0.63
0.9
77.9
35.6
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
YAF2
Ensembl Gene ID:
ENSAPLG00000023613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044669
30348601 - 30375111
26511