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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30374862_30375085_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30374862 - 30375085
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAG
5'SS Class:
major
3'SS Sequence:
GTCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCCC
U12 Branch Point Sequence:
GCCGCCTGCCCC
Flanking Amino Acid:
MGDKKSPTRPKRQPKPSS
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.6
41.6
Major BPS
22.7
-1.7
4
48.8
46.3
Major PPT
68.8
0.42
0.8
61.8
28.9
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
31.6
-1.4
3.4
43.01
44.4

Associated Gene:

Gene:
YAF2
Ensembl Gene ID:
ENSAPLG00000023613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044669
30348601 - 30375111
26511