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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30384476_30391605_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30384476 - 30391605
Intron Length:
7130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAC
U12 Branch Point Sequence:
TTTTGTGTAACT
Flanking Amino Acid:
QVRTWCKVYTAARGKQFSSR
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.3
Major BPS
54.8
0.12
1.1
61.2
32.7
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
38.4
-1.3
2.9
49.3
46.9
Minor BPS
59
0.36
2.4
87.23
39

Associated Gene:

Gene:
ZCRB1
Ensembl Gene ID:
ENSAPLG00000004312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027686
30384234 - 30414406
30173