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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30384476_30408560_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30384476 - 30408560
Intron Length:
24085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGCTTATT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAC
U12 Branch Point Sequence:
TTTTGTGTAACT
Flanking Amino Acid:
DDSKRPRIKKTARGKQFSSR
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
73.7
36.7
Major BPS
54.8
0.12
1.1
61.2
32.7
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
36.9
-1.5
3.2
50.9
39.9
Minor BPS
59
0.36
2.4
87.23
39

Associated Gene:

Gene:
ZCRB1
Ensembl Gene ID:
ENSAPLG00000004312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035799
30384234 - 30418857
34624