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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30388497_30391605_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30388497 - 30391605
Intron Length:
3109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGACTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CATTTCTTGACT
Flanking Amino Acid:
QVRTWCKVYTEGCWNQNMTP
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.4
0.62
0.8
74.4
35.4
Minor 5ss
38.4
-1.3
2.9
49.3
46.9
Minor BPS
75.8
0.89
1.2
83.44
37.7

Associated Gene:

Gene:
ZCRB1
Ensembl Gene ID:
ENSAPLG00000004312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047438
30387005 - 30414406
27402