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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3039182_3040067_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3039182 - 3040067
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTCTCTTGTAAG
Flanking Amino Acid:
TPPHVAAGLKDPVPSGFSAG
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
72.3
0.5
1.1
79.3
33
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
47.1
-0.3
2
57.05
44.5

Associated Gene:

Gene:
RBM17
Ensembl Gene ID:
ENSAPLG00000004190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004309
3036251 - 3049170
12920