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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30392090_30409998_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30392090 - 30409998
Intron Length:
17909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
GAATTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCTTCTGGAATT
Flanking Amino Acid:
DSLSQAIAVQTLEGKMNLEK
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.6
0.55
1
70.8
43.8
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
52.8
0.16
2.1
76.06
41.4

Associated Gene:

Gene:
ZCRB1
Ensembl Gene ID:
ENSAPLG00000004312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032435
30390751 - 30414410
23660