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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3040235_3041658_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3040235 - 3041658
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATCC
Flanking Amino Acid:
ERQKEIEEREKRRKDRHEAS
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
76.2
39.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.8
0.45
0.9
61.8
40
Minor 5ss
38.4
-1.3
3.6
56.8
41.8
Minor BPS
70.8
0.63
1.6
78.75
36.6

Associated Gene:

Gene:
RBM17
Ensembl Gene ID:
ENSAPLG00000004190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004309
3036251 - 3049170
12920