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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30410075_30410174_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30410075 - 30410174
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTACA
5'SS Class:
major
3'SS Sequence:
CTGCACAACGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
ATCTCTGTATTT
Flanking Amino Acid:
KRKKVVEPEEIEEEEESEEE
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.4
33.8
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
48.8
-0
1.1
46.1
34.2
Minor 5ss
44.5
-0.6
2.5
56.5
41
Minor BPS
47.9
-0
2.2
69.31
42.7

Associated Gene:

Gene:
ZCRB1
Ensembl Gene ID:
ENSAPLG00000004312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027686
30384234 - 30414406
30173
ENSAPLT00000037693
30384341 - 30419159
34819
ENSAPLT00000004441
30384341 - 30415247
30907
ENSAPLT00000035799
30384234 - 30418857
34624
ENSAPLT00000032435
30390751 - 30414410
23660
ENSAPLT00000028036
30408523 - 30419159
10637
ENSAPLT00000047438
30387005 - 30414406
27402