About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30410285_30411134_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30410285 - 30411134
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTTGTTAACT
Flanking Amino Acid:
FDKSKCYECGEAGHLSYACP
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
72.2
0.5
1.1
72.7
36.6
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
75
0.86
2
95.32
31.5

Associated Gene:

Gene:
ZCRB1
Ensembl Gene ID:
ENSAPLG00000004312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032435
30390751 - 30414410
23660
ENSAPLT00000028036
30408523 - 30419159
10637
ENSAPLT00000047438
30387005 - 30414406
27402
ENSAPLT00000027686
30384234 - 30414406
30173
ENSAPLT00000037693
30384341 - 30419159
34819
ENSAPLT00000004441
30384341 - 30415247
30907
ENSAPLT00000035799
30384234 - 30418857
34624