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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30414411_30415146_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30414411 - 30415146
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTTCA
5'SS Class:
major
3'SS Sequence:
CTCCTTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
AACAGTTTAACT
Flanking Amino Acid:
HEEKHSLFSFKKMSGGLAPS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.6
32.9
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
77.5
0.62
0.8
77.4
29.8
Minor 5ss
38.6
-1.3
2.6
43.9
37.1
Minor BPS
53.7
0.2
1.8
67.99
42.9

Associated Gene:

Gene:
ZCRB1
Ensembl Gene ID:
ENSAPLG00000004312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004441
30384341 - 30415247
30907