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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30414411_30418717_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30414411 - 30418717
Intron Length:
4307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGCATA
5'SS Class:
weak_major
3'SS Sequence:
CTCCTTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
AACAGTTTAACT
Flanking Amino Acid:
NLPHVGFVNLIKMSGGLAPS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
72.7
38.2
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
77.5
0.62
0.8
77.4
29.8
Minor 5ss
55.3
0.18
2.4
70.3
40.4
Minor BPS
53.7
0.2
1.8
67.99
42.9

Associated Gene:

Gene:
ZCRB1
Ensembl Gene ID:
ENSAPLG00000004312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037693
30384341 - 30419159
34819
ENSAPLT00000035799
30384234 - 30418857
34624
ENSAPLT00000028036
30408523 - 30419159
10637