Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3041757_3042713_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3041757 - 3042713

Intron Length:

957

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGGGAG

5'SS Class:

major

3'SS Sequence:

GTTTTCTTCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAACCAT

U12 Branch Point Sequence:

GTTTTCTTCATA

Flanking Amino Acid:

EDYERERRKRSMGGAAIAPP

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

66.8

38.9

Major BPS

57.8

0.19

1.3

67.1

39.2

Major PPT

0.7

0.8

76.6

32.2

Minor 5ss

30.3

-2.3

3.5

37.6

41.6

Minor BPS

64.7

0.46

1.7

75.34

36.5

Associated Gene:

Gene:

RBM17

Ensembl Gene ID:

ENSAPLG00000004190

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004309

3036251 - 3049170

12920