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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30419276_30423652_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
30419276 - 30423652
Intron Length:
4377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGACC
5'SS Class:
major
3'SS Sequence:
TTTCTATTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTTCTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
65
38.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
80.4
0.68
0.8
73.9
35.7
Minor 5ss
39.7
-1.2
3
52.9
44
Minor BPS
49.2
0.02
1.8
70.85
40.8

Associated Gene:

Gene:
PPHLN1
Ensembl Gene ID:
ENSAPLG00000003974
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004083
30419180 - 30489307
70128