About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30423701_30424993_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
30423701 - 30424993
Intron Length:
1293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGGTTTTGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.6
0.67
0.8
78.1
36.2
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
57.3
0.31
1.4
69.3
42.8

Associated Gene:

Gene:
PPHLN1
Ensembl Gene ID:
ENSAPLG00000003974
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004083
30419180 - 30489307
70128