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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30425086_30429388_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30425086 - 30429388
Intron Length:
4303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ATGTTAAAAACA
Flanking Amino Acid:
ENVFLRGFIQMMITIE**TL
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74.5
0.55
1
73.5
41.9
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
44.6
-0.4
2.1
59.4
40.3

Associated Gene:

Gene:
PPHLN1
Ensembl Gene ID:
ENSAPLG00000003974
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004083
30419180 - 30489307
70128