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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3045271_3046960_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3045271 - 3046960
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATGTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CCTTTACTAACT
Flanking Amino Acid:
GPSNSFLANMGGTVAHKIMQ
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.6
35.9
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
37.5
-1.4
3.5
49.3
47
Minor BPS
52.1
0.14
2
73.17
43.7

Associated Gene:

Gene:
RBM17
Ensembl Gene ID:
ENSAPLG00000004190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004309
3036251 - 3049170
12920