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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30454390_30458106_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30454390 - 30458106
Intron Length:
3717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAAACCTTCACT
Flanking Amino Acid:
LRVPQQCHHQRHWIRATDYR
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.8
86.3
23.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
40
-1.1
3.1
57.8
46.8
Minor BPS
64.1
0.52
1.8
79.26
42.1

Associated Gene:

Gene:
PPHLN1
Ensembl Gene ID:
ENSAPLG00000003974
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004083
30419180 - 30489307
70128