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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30458227_30461308_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30458227 - 30461308
Intron Length:
3082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
KAVYLKEQSMMLDLQRQCMS
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
64.6
41.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
33.7
-1.9
3.2
44
43.4
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
PPHLN1
Ensembl Gene ID:
ENSAPLG00000003974
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004083
30419180 - 30489307
70128