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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3047113_3047722_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3047113 - 3047722
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCATAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATTCCATGATT
Flanking Amino Acid:
KIIVGDATEKDATKKTDSNP
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.6
0.55
0.9
70.7
33.3
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
69.3
0.69
1.6
85.26
34.7

Associated Gene:

Gene:
RBM17
Ensembl Gene ID:
ENSAPLG00000004190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004309
3036251 - 3049170
12920