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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3047797_3048179_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3047797 - 3048179
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TGTTGTTTAAAC
Flanking Amino Acid:
KCPTKVVLLRNMVGAGEVDE
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
79.1
0.65
0.9
74.8
39.7
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
60.4
0.31
1.9
72.23
38.8

Associated Gene:

Gene:
RBM17
Ensembl Gene ID:
ENSAPLG00000004190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004309
3036251 - 3049170
12920