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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30495061_30496683_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30495061 - 30496683
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
ACTCCCACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTTTTCAACT
Flanking Amino Acid:
MDSLALSNITGASMDGEGKP
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
65.6
0.35
0.9
55.4
34.3
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
69.2
0.68
1.5
83.3
38.2

Associated Gene:

Gene:
PRICKLE1
Ensembl Gene ID:
ENSAPLG00000003842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003936
30494204 - 30557584
63381