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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30497548_30497676_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30497548 - 30497676
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTTGAGAGAACC
Flanking Amino Acid:
EYCETCGEHIGVDHAQMTYD
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
41.1
-0.6
2.4
61.31
43.5

Associated Gene:

Gene:
PRICKLE1
Ensembl Gene ID:
ENSAPLG00000003842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003936
30494204 - 30557584
63381