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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30498614_30499085_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30498614 - 30499085
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCCA
5'SS Class:
major
3'SS Sequence:
TTCTTGTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GTGATATGAAGT
Flanking Amino Acid:
RAVMHAVCEQCGTKVNGGEV
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
63.2
42.9
Major BPS
66.7
0.41
1
57.8
39
Major PPT
79.1
0.66
0.8
72.7
37.5
Minor 5ss
36.6
-1.5
3.3
48.7
47
Minor BPS
43.5
-0.4
1.9
59.31
43.4

Associated Gene:

Gene:
PRICKLE1
Ensembl Gene ID:
ENSAPLG00000003842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003936
30494204 - 30557584
63381