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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30502535_30556739_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
30502535 - 30556739
Intron Length:
54205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGTTTATTAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
54.3
-0
1.8
61.12
40.1

Associated Gene:

Gene:
PRICKLE1
Ensembl Gene ID:
ENSAPLG00000003842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003936
30494204 - 30557584
63381