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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3053350_3053498_F

Intron Information:

Intron Rank:
141717
Intron Class:
major
Intron Phase:
Intron Coordinates:
3053350 - 3053498
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTCTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.2
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
34.7
-1.7
2.8
35.3
41.4
Minor BPS
59.8
0.39
1.4
70.85
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047347
3053192 - 3055909
2718