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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3053849_3055038_F

Intron Information:

Intron Rank:
141718
Intron Class:
major
Intron Phase:
Intron Coordinates:
3053849 - 3055038
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TCTCCCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TCTCCCCTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
60.3
0.26
1
65.5
28
Major PPT
82.8
0.74
0.7
76.2
26
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
53.9
0.12
2
70.11
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047347
3053192 - 3055909
2718