About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30665470_30669209_R

Intron Information:

Intron Rank:
132898
Intron Class:
major
Intron Phase:
Intron Coordinates:
30665470 - 30669209
Intron Length:
3740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
AAATTTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65
41.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.8
0.42
1
62.8
43.1
Minor 5ss
37.7
-1.4
3.1
40.4
45.8
Minor BPS
68.8
0.58
1.6
80.83
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018726
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048133
30665293 - 30685496
20204