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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30781653_30783772_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30781653 - 30783772
Intron Length:
2120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TTTGTTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TGTGTTTTACCT
Flanking Amino Acid:
DCYSAARCPQGQFSINLAGT
Intron Amino Acid Position:
1849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
76.8
0.6
0.9
77.9
36.6
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
57.7
0.32
1.7
75.46
41.9

Associated Gene:

Gene:
ADAMTS20
Ensembl Gene ID:
ENSAPLG00000003314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038569
30780783 - 30873586
92804
ENSAPLT00000003449
30780783 - 30873871
93089