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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30785264_30785416_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30785264 - 30785416
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CAATCCTTCACT
Flanking Amino Acid:
DTRKICHAEECEILSTCKDI
Intron Amino Acid Position:
1710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.3
0.48
1
71.3
33
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
66.3
0.59
1.8
78.04
43.9

Associated Gene:

Gene:
ADAMTS20
Ensembl Gene ID:
ENSAPLG00000003314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038569
30780783 - 30873586
92804
ENSAPLT00000003449
30780783 - 30873871
93089