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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30786914_30790820_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30786914 - 30790820
Intron Length:
3907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACAC
Flanking Amino Acid:
YHWLADEWEDCSTSYRREEI
Intron Amino Acid Position:
1543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.8
0.51
0.9
70.6
34.1
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
53.5
0.09
1.9
71.5
39.6

Associated Gene:

Gene:
ADAMTS20
Ensembl Gene ID:
ENSAPLG00000003314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038569
30780783 - 30873586
92804
ENSAPLT00000003449
30780783 - 30873871
93089