Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30794025_30812146_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30794025 - 30812146

Intron Length:

18122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTACGATAG

5'SS Class:

major

3'SS Sequence:

CTTCTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAA

U12 Branch Point Sequence:

TTTTAGTGAAGT

Flanking Amino Acid:

VSWHRGPWKSCSVSCGKGLK

Intron Amino Acid Position:

1429

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

60.1

41.5

Major BPS

67.7

0.44

38.9

Major PPT

89.9

0.9

0.6

88.1

21.8

Minor 5ss

36.7

-1.5

3.3

47.4

Minor BPS

47.4

-0.1

2.5

77.85

44.1

Associated Gene:

Gene:

ADAMTS20

Ensembl Gene ID:

ENSAPLG00000003314

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038569

30780783 - 30873586

92804

ENSAPLT00000003449

30780783 - 30873871

93089