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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3080412_3085316_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3080412 - 3085316
Intron Length:
4905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AGCTGCTGATGT
Flanking Amino Acid:
NDNRPALPRRSCGPQLANSP
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
64.8
40.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
81.4
0.71
0.7
77
25
Minor 5ss
33.5
-1.9
2.7
44.8
42.5
Minor BPS
40.7
-0.6
2.2
55.65
46.2

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041007
3062201 - 3099157
36957
ENSAPLT00000022683
3062201 - 3099180
36980
ENSAPLT00000004648
3062201 - 3096557
34357