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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30824643_30828523_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30824643 - 30828523
Intron Length:
3881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTGCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTCTGTAATT
Flanking Amino Acid:
LAGTFNSARYGYNVVVKIPK
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.8
0.49
1
63.6
41.9
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
64
0.52
2
83.09
39.1

Associated Gene:

Gene:
ADAMTS20
Ensembl Gene ID:
ENSAPLG00000003314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038569
30780783 - 30873586
92804
ENSAPLT00000003449
30780783 - 30873871
93089