Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30831853_30838266_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30831853 - 30838266

Intron Length:

6414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

GTCAACTGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACAAAT

U12 Branch Point Sequence:

TTTCTGTCAACT

Flanking Amino Acid:

ADGTVCGVGMHCRHGICVSR

Intron Amino Acid Position:

539

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

69.5

0.48

73.5

28.6

Major PPT

0.34

1.1

57.7

42.8

Minor 5ss

43.9

-0.7

3.2

62.5

43.1

Minor BPS

0.2

2.2

81.4

40.1

Associated Gene:

Gene:

ADAMTS20

Ensembl Gene ID:

ENSAPLG00000003314

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038569

30780783 - 30873586

92804

ENSAPLT00000003449

30780783 - 30873871

93089