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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3085443_3085562_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3085443 - 3085562
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGGTTTTGATGT
Flanking Amino Acid:
YLNWIGVPTKVFNVGEYRRE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84
0.76
0.8
80.2
31.8
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
44.5
-0.3
1.9
60.48
43.6

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004648
3062201 - 3096557
34357
ENSAPLT00000041007
3062201 - 3099157
36957
ENSAPLT00000022683
3062201 - 3099180
36980
ENSAPLT00000019373
3083188 - 3099157
15970