About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3085660_3086113_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3085660 - 3086113
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GGGCTCTCATCT
Flanking Amino Acid:
PDNEEAMKVRRQCALAALRD
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
83
0.74
0.8
77.3
30.7
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
46
-0.2
1.8
59.15
43.6

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022683
3062201 - 3099180
36980
ENSAPLT00000019373
3083188 - 3099157
15970
ENSAPLT00000004648
3062201 - 3096557
34357
ENSAPLT00000041007
3062201 - 3099157
36957