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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30859515_30873239_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30859515 - 30873239
Intron Length:
13725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTCTCTTACTT
Flanking Amino Acid:
MAVFSICGGLMGTFKTHDGE
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
83.9
0.76
0.8
81.1
29.7
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
60.9
0.42
1.6
76.4
40.9

Associated Gene:

Gene:
ADAMTS20
Ensembl Gene ID:
ENSAPLG00000003314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003449
30780783 - 30873871
93089