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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3087317_3088813_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3087317 - 3088813
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GTTTTCTCCCCT
Flanking Amino Acid:
DPTVVATNVMEVKLSSPDYR
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
74.5
0.55
0.8
68.4
31.9
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
39.6
-0.7
3.6
72.31
44.6

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041007
3062201 - 3099157
36957
ENSAPLT00000022683
3062201 - 3099180
36980
ENSAPLT00000019373
3083188 - 3099157
15970
ENSAPLT00000004648
3062201 - 3096557
34357