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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30873587_30873780_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30873587 - 30873780
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CTGTCCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
GGAGGCTGAGTG
Flanking Amino Acid:
SRGLRFHPGQETLVKRLSSY
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
72.5
0.51
0.9
65.6
36
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
37.3
-1.1
1.9
34.65
39.7

Associated Gene:

Gene:
ADAMTS20
Ensembl Gene ID:
ENSAPLG00000003314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003449
30780783 - 30873871
93089