Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3088939_3089644_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3088939 - 3089644

Intron Length:

706

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

GTGCTTTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

TCCCCCTCATCC

Flanking Amino Acid:

YQPLDPDDYDRELSLIKVID

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.5

34.4

Major BPS

0.5

1.1

71.2

35.2

Major PPT

69.5

0.44

0.9

39.9

Minor 5ss

34.3

-1.8

44.8

42.9

Minor BPS

49.3

-0

1.9

59.93

Associated Gene:

Gene:

PFKFB3

Ensembl Gene ID:

ENSAPLG00000004459

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004648

3062201 - 3096557

34357

ENSAPLT00000041007

3062201 - 3099157

36957

ENSAPLT00000022683

3062201 - 3099180

36980

ENSAPLT00000019373

3083188 - 3099157

15970