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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30892724_30892943_F

Intron Information:

Intron Rank:
151290
Intron Class:
major
Intron Phase:
Intron Coordinates:
30892724 - 30892943
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTGTCTATACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
78.6
0.64
0.9
72.8
36.6
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
46.7
-0.3
2
57.18
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029455
30890316 - 30893259
2944
ENSAPLT00000022332
30888553 - 30894654
6102