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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3091236_3092034_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3091236 - 3092034
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCCTC
5'SS Class:
major
3'SS Sequence:
TCTTCTGTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTGTGCTTATCT
Flanking Amino Acid:
KYYYRYPSGESYQDLVQRLE
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.1
67.1
44.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
79.9
0.67
0.8
72.3
37.7
Minor 5ss
41
-1
3.4
58.6
46.2
Minor BPS
56
0.27
2.1
75.27
47.4

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041007
3062201 - 3099157
36957
ENSAPLT00000022683
3062201 - 3099180
36980
ENSAPLT00000019373
3083188 - 3099157
15970
ENSAPLT00000004648
3062201 - 3096557
34357