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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3092165_3092382_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3092165 - 3092382
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
GTAACCTAACCT
Flanking Amino Acid:
LLAYFLDKSADEMPYLKCPL
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
83
0.74
0.8
77.1
31.6
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
49.8
0.06
2
70.47
45.8

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041007
3062201 - 3099157
36957
ENSAPLT00000022683
3062201 - 3099180
36980
ENSAPLT00000019373
3083188 - 3099157
15970
ENSAPLT00000004648
3062201 - 3096557
34357