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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30928293_30928927_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30928293 - 30928927
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
ESANKYSIHQVVLPMVGHSI
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.9
83.8
24.9
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
PUS7L
Ensembl Gene ID:
ENSAPLG00000012601
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013138
30927748 - 30938671
10924