About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30928982_30930325_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30928982 - 30930325
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
NDESLSLNDKVHVVTAPEES
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.2
0.57
1
69
41.9
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
PUS7L
Ensembl Gene ID:
ENSAPLG00000012601
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013138
30927748 - 30938671
10924