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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30935158_30936841_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30935158 - 30936841
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTAGAA
5'SS Class:
major
3'SS Sequence:
ATTGTTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TTTCTCCCAATT
Flanking Amino Acid:
PMVVKKVTPERLKEIGSKME
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
64.3
35.6
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
79.2
0.66
1
74.2
40
Minor 5ss
28.7
-2.4
3.4
38.4
46.5
Minor BPS
53.5
0.19
1.9
78.34
37.8

Associated Gene:

Gene:
PUS7L
Ensembl Gene ID:
ENSAPLG00000012601
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013138
30927748 - 30938671
10924